Databases Available for Hydra 2.0 BLAST

Nucleotide Databases

Augustus Gene Models
A BLAST database consisting of 36,059 Hydra 2.0 Augustus gene predictions models.
Hydra 2.0 Genome
A BLAST database containing all 5,525 Hydra 2.0 genomic scaffolds.
Juliano Trinity (JT)
A BLAST database of assembled Hydra transcripts. Hydra RNA-seq reads from Juliano et al. 2015 (PNAS) were assembled using Trinity into 46,543 transcripts.
Juliano aepLRv2
A BLAST database containing 38,749 transcripts from the low redundancy transcriptome assembly for Hydra vulgaris AEP.
Petersen Trinity (PT)
A BLAST database of assembled Hydra transcripts. Hydra RNA-seq reads from Petersen et al. 2015 (Molecular Biology and Evolution) from time points 0-12 hours were assembled, using Trinity into a de novo transcriptome consisting of 36,338 transcripts.

Protein Databases

Augustus Protein Models
A BLAST database of 36,059 translated proteins derived from the Hydra 2.0 Augustus gene prediction models..




Nucleotide Sequence Databases: Augustus Gene Models: A BLAST database consisting of 36,059 Hydra 2.0 Augustus gene predictions models. Hydra 2.0 Genome: A BLAST database containing all 5,525 Hydra 2.0 genomic scaffolds. Juliano Trinity (JT): A BLAST database of assembled Hydra transcripts. Hydra RNA-seq reads from Juliano et al. 2015 (PNAS) were assembled using Trinity into 46,543 transcripts. Petersen Trinity (PT): A BLAST database of assembled Hydra transcripts. Hydra RNA-seq reads from Petersen et al. 2015 (Molecular Biology and Evolution) from time points 0-12 hours were assembled, using Trinity into a de novo transcriptome consisting of 36,338 transcripts. Protein Sequence Databases: Augustus Protein Models: A BLAST database of 36,059 translated proteins derived from the Hydra 2.0 Augustus gene prediction models.